STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ctha_0223PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: chu:CHU_0195 sigma factor SigB regulation protein. (751 aa)    
Predicted Functional Partners:
Ctha_0225
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: cau:Caur_1060 anti-anti-sigma factor.
 
 
 0.972
Ctha_0224
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fnu:FN1914 anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.971
Ctha_1666
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aba:Acid345_2516 anti-sigma-factor antagonist.
 
 
 0.941
Ctha_0250
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sus:Acid_4696 anti-sigma-factor antagonist.
 
 
 0.938
Ctha_1614
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: chu:CHU_3500 anti-sigma regulatory factor.
 
 
 0.931
Ctha_0019
KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
 
  
 0.924
Ctha_0605
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: ana:all2875 two-component hybrid sensor and regulator.
 
  
 0.909
Ctha_1929
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor, putative; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.905
Ctha_2058
Hypothetical protein; KEGG: dau:Daud_1091 radical SAM domain protein.
   
  
 0.786
Ctha_2355
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: hch:HCH_00541 chemotaxis protein histidine kinase and related kinase.
 
  
 0.768
Your Current Organism:
Chloroherpeton thalassium
NCBI taxonomy Id: 517418
Other names: C. thalassium ATCC 35110, Chloroherpeton thalassium ATCC 35110, Chloroherpeton thalassium str. ATCC 35110, Chloroherpeton thalassium strain ATCC 35110
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