STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ctha_1206PFAM: NUDIX hydrolase; KEGG: pvi:Cvib_0546 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (171 aa)    
Predicted Functional Partners:
Ctha_0620
PFAM: NUDIX hydrolase; KEGG: lsp:Bsph_2426 MutT/NUDIX family protein.
  
     0.533
Ctha_1207
Carbamoyl-phosphate synthase L chain ATP-binding; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.532
Ctha_0522
KEGG: plt:Plut_0286 hypothetical protein.
  
     0.412
Ctha_1415
KEGG: chu:CHU_1311 hypothetical protein.
  
     0.412
Your Current Organism:
Chloroherpeton thalassium
NCBI taxonomy Id: 517418
Other names: C. thalassium ATCC 35110, Chloroherpeton thalassium ATCC 35110, Chloroherpeton thalassium str. ATCC 35110, Chloroherpeton thalassium strain ATCC 35110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.