STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ctha_1707PFAM: ribulose bisphosphate carboxylase large chain; KEGG: cte:CT1772 ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family. (433 aa)    
Predicted Functional Partners:
Ctha_0075
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3382 HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.908
Ctha_1644
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: plt:Plut_1678 hydrolase, haloacid dehalogenase-like family.
    
 0.908
Ctha_1708
PFAM: protein of unknown function UPF0047; KEGG: rpb:RPB_0301 protein of unknown function UPF0047.
 
     0.853
Ctha_1038
KEGG: plt:Plut_0290 acetyltransferase, CysE/LacA/LpxA/NodL family.
    
 
 0.802
Ctha_2153
PFAM: transferase hexapeptide repeat containing protein; KEGG: mbu:Mbur_1588 transferase hexapeptide repeat.
    
 
 0.802
Ctha_2411
PFAM: FAD dependent oxidoreductase; KEGG: cte:CT1898 protoporphyrinogen oxidase, putative.
  
     0.676
Ctha_0627
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cte:CT2014 bacteriochlorophyll synthase, 23 kDa subunit.
  
     0.641
Ctha_0034
PFAM: class II aldolase/adducin family protein; KEGG: cpy:Cphy_1177 class II aldolase/adducin family protein.
  
  
 0.627
pgk
PFAM: phosphoglycerate kinase; KEGG: cch:Cag_0044 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.602
Ctha_0321
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.591
Your Current Organism:
Chloroherpeton thalassium
NCBI taxonomy Id: 517418
Other names: C. thalassium ATCC 35110, Chloroherpeton thalassium ATCC 35110, Chloroherpeton thalassium str. ATCC 35110, Chloroherpeton thalassium strain ATCC 35110
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