STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC91320.1Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 4.0e-45 sensory transduction protein kinase; Psort location: CytoplasmicMembrane, score: 9.75. (721 aa)    
Predicted Functional Partners:
EEC91075.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: eci:UTI89_C1612 6.9e-20 ydaM; hypothetical protein YdaM; Psort location: Cytoplasmic, score: 8.87.
 0.996
EEC91078.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 1.4e-47 sensory transduction protein kinase; Psort location: Cytoplasmic, score: 9.98.
 
0.994
EEC91183.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: mca:MCA1246 1.7e-08 methyltransferase CheR, putative K03412:K00575; Psort location: Cytoplasmic, score: 8.87.
 
 0.992
EEC90067.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: eci:UTI89_C1612 2.5e-10 ydaM; hypothetical protein YdaM.
 
 0.981
EEC89451.1
Response regulator receiver domain protein; KEGG: vfi:VF1296 2.3e-54 luxQ; sensor protein LuxQ; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.977
EEC89265.1
PAS domain S-box protein; KEGG: chu:CHU_2895 2.1e-57 sensory box histidine kinase/response regulator; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.975
EEC89932.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: ava:Ava_1777 5.8e-28 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; Psort location: CytoplasmicMembrane, score: 7.63.
 
 0.974
EEC90951.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 2.4e-17 sensory transduction protein kinase; Psort location: Cytoplasmic, score: 8.87.
 
 0.959
EEC89958.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 3.0e-17 sensory transduction protein kinase.
 
0.930
EEC90090.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: syn:slr2104 2.4e-65 hik22; two-component hybrid histidine kinase K02486; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.910
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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