STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90334.1Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sag:SAG1171 8.4e-64 cpsE; glycosyl transferase CpsE K01005; Psort location: CytoplasmicMembrane, score: 10.00. (483 aa)    
Predicted Functional Partners:
EEC90297.1
Capsular exopolysaccharide family; KEGG: mkm:Mkms_0964 4.5e-33 lipopolysaccharide biosynthesis K08252; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.913
EEC91279.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 4.6e-88 glycosyltransferase K00754.
  
 
 0.835
EEC90295.1
Chain length determinant protein; KEGG: rha:RHA1_ro05453 9.8e-15 probable protein-tyrosine kinase K08252; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.790
EEC90335.1
Hypothetical protein.
       0.773
EEC90305.1
Polysaccharide biosynthesis protein; KEGG: lsl:LSL_0995 1.2e-103 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; Psort location: CytoplasmicMembrane, score: 9.97.
 
 0.665
EEC91284.1
Glycosyltransferase, group 2 family protein; KEGG: afu:AF0322 2.1e-11 rfbQ; rhamnosyl transferase K00754.
 
 
 0.639
EEC90212.1
Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.633
EEC90336.1
NAD dependent epimerase/dehydratase family protein; KEGG: bcz:BCZK3072 9.0e-13 galE; UDP-glucose 4-epimerase K01784.
  
  
 0.623
EEC90339.1
Hypothetical protein.
  
  
 0.618
EEC90025.1
Transcriptional regulator, AraC family; KEGG: bca:BCE_3772 1.5e-16 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K00567; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.591
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.