STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89783.1ABC transporter, permease protein; KEGG: baa:BA_0884 3.3e-37 binding-protein-dependent transport systems inner membrane component K00294; Psort location: CytoplasmicMembrane, score: 10.00. (213 aa)    
Predicted Functional Partners:
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 0.999
EEC89785.1
NLPA lipoprotein.
 0.999
metA
KEGG: blo:BL0365 1.3e-88 metA; homoserine O-succinyltransferase K00651; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.707
EEC89782.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.491
EEC90610.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL6466 6.0e-54 ABC-type transport systems, involved in lipoprotein release, ATPase components K06020; Psort location: CytoplasmicMembrane, score: 9.49.
   
  0.449
EEC89570.1
KEGG: fal:FRAAL1681 8.1e-43 putative ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
   
  0.448
EEC88968.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: poy:PAM488 2.2e-33 glnQ; ABC-type polar amino acid transport system, ATPase component K02028; Psort location: CytoplasmicMembrane, score: 9.49.
   
  0.444
EEC89866.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2804 1.1e-38 ABC transporter component K06020; Psort location: CytoplasmicMembrane, score: 9.49.
   
  0.442
EEC90364.1
ABC transporter, ATP-binding protein; KEGG: pen:PSEEN0068 5.3e-39 D-methionine ABC transporter MetN, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
   
  0.441
EEC91096.1
KEGG: pen:PSEEN3042 2.3e-62 macB; macrolide ABC efflux protein MacB; Psort location: CytoplasmicMembrane, score: 9.99.
    
 0.430
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.