STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_0604PFAM: major facilitator superfamily MFS_1; KEGG: mno:Mnod_3105 major facilitator superfamily MFS_1. (393 aa)    
Predicted Functional Partners:
Rmar_0603
PFAM: cytochrome c biogenesis protein transmembrane region; protein of unknown function DUF255; KEGG: sus:Acid_6757 redoxin domain-containing protein.
       0.762
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.544
Rmar_1299
PFAM: protein of unknown function DUF114; KEGG: afw:Anae109_3319 hypothetical protein.
  
     0.510
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.488
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.428
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.420
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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