STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_1894Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rpb:RPB_3227 rubisco-like protein Rlp1. (377 aa)    
Predicted Functional Partners:
Rmar_1353
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sus:Acid_1554 hydrolase.
    
 0.910
Rmar_1541
KEGG: ade:Adeh_2353 hexapaptide repeat-containing transferase.
    
 
 0.688
Rmar_1555
KEGG: azo:azo0298 phenyl acetic acid degradation protein.
    
 
 0.688
Rmar_0470
L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: esa:ESA_03278 L-ribulose-5-phosphate 4- epimerase.
  
  
 0.647
mtnA
Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
 
  
 0.641
Rmar_2433
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.621
Rmar_1883
PFAM: Cupin 2 conserved barrel domain protein; KEGG: rru:Rru_A2000 hypothetical protein.
 
     0.619
pgk
PFAM: phosphoglycerate kinase; KEGG: aba:Acid345_2542 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.590
Rmar_1895
KEGG: pau:PA14_40260 hypothetical protein.
       0.545
Rmar_2130
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: msl:Msil_3402 D-lactate dehydrogenase (cytochrome).
     
 0.500
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.