STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR54631.1Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily. (245 aa)    
Predicted Functional Partners:
SFR49458.1
Hypothetical protein.
  
     0.654
SFR40298.1
Cell division protein ZapC.
  
     0.633
SFR39890.1
Hypothetical protein.
  
     0.581
SFR43540.1
Type IVB pilus formation outer membrane protein, R64 PilN family.
  
     0.546
SFR54621.1
RHS repeat-associated core domain-containing protein.
       0.545
SFR54609.1
Hypothetical protein.
       0.527
SFR39881.1
Hypothetical protein.
  
     0.492
SFR51137.1
Aspartate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
     0.479
SFR46698.1
Hypothetical protein.
  
     0.469
SFR54644.1
Catecholate siderophore receptor.
       0.444
Your Current Organism:
Idiomarina maritima
NCBI taxonomy Id: 519453
Other names: CGMCC 1.7285, I. maritima, Idiomarina maritima (Wu et al. 2009) Taborda et al. 2010, JCM 15534, Pseudidiomarina maritima, Pseudidiomarina maritima Wu et al. 2009, Pseudidiomarina sp. 908087, strain 908087
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.