STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT41305.1DNA-directed RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (316 aa)    
Predicted Functional Partners:
AKT35917.1
Uncharacterized protein.
  
     0.688
AKT35915.1
Uncharacterized protein.
  
     0.661
rpoE
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.556
AKT42580.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.548
AKT41306.1
Uncharacterized protein.
  
    0.510
AKT38550.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.498
AKT43221.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.485
AKT36034.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.452
AKT41184.1
Uncharacterized protein.
  
     0.448
AKT40068.1
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.447
Your Current Organism:
Chondromyces crocatus
NCBI taxonomy Id: 52
Other names: C. crocatus, DSM 14714, JCM 12616, Myxobotrys variabilis, TC 601, strain Cm c5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.