STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFBComF operon protein 2. (87 aa)    
Predicted Functional Partners:
KXG76330.1
Hypothetical protein.
  
  
 0.868
ypdF
Aminopeptidase YpdF.
       0.644
epsF
Type II secretion system protein F.
  
  
 0.589
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.574
xpsE
Type II secretion system protein E.
  
    0.565
pilE
Fimbrial protein.
  
    0.531
KXG76790.1
Hypothetical protein.
       0.507
KXG75768.1
Hypothetical protein.
  
     0.489
KXG76781.1
Hypothetical protein.
       0.483
KXG76785.1
Hypothetical protein.
       0.483
Your Current Organism:
Thermotalea metallivorans
NCBI taxonomy Id: 520762
Other names: Clostridiaceae bacterium B2-1, DSM 21119, JCM 15105, KCTC 5625, T. metallivorans, Thermotalea metallivorans Ogg and Patel 2009, strain B2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.