STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps27ePFAM: Ribosomal protein S27E; KEGG: mem:Memar_2050 30S ribosomal protein S27e. (62 aa)    
Predicted Functional Partners:
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
 
 
 0.998
rps17e
KEGG: mem:Memar_1459 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
 
 
 0.993
rpl18e
PFAM: ribosomal protein L15; KEGG: mbn:Mboo_2221 50S ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 
 0.987
rps24e
PFAM: Ribosomal protein S24e; KEGG: mem:Memar_2245 ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.983
Mpal_2529
PFAM: Ribosomal protein L15e; KEGG: mem:Memar_1681 50S ribosomal protein L15e.
  
 
 0.982
rpl40e
KEGG: mbn:Mboo_0238 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 
 0.976
rpl21e
PFAM: Ribosomal protein L21e; KEGG: mem:Memar_1961 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
 
 
 0.975
rps6e
PFAM: Ribosomal protein S6e; KEGG: mla:Mlab_1519 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 
 0.974
rps13
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
   
   0.972
rpl31e
PFAM: Ribosomal protein L31e; KEGG: mem:Memar_1969 50S ribosomal protein L31e; Belongs to the eukaryotic ribosomal protein eL31 family.
 
 
 0.970
Your Current Organism:
Methanosphaerula palustris
NCBI taxonomy Id: 521011
Other names: Candidatus Methanosphaerula palustris E1-9c, M. palustris E1-9c, Methanosphaerula palustris E1-9c, Methanosphaerula palustris str. E1-9c, Methanosphaerula palustris strain E1-9c
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