node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tpau_0003 | Tpau_0201 | Tpau_0003 | Tpau_0201 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme. | 0.881 |
Tpau_0003 | Tpau_2173 | Tpau_0003 | Tpau_2173 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: rop:ROP_05710 putative 5'-3' exonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2. | 0.970 |
Tpau_0003 | Tpau_3874 | Tpau_0003 | Tpau_3874 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: msm:MSMEG_6153 DNA polymerase III subunit delta'; SMART: AAA ATPase. | 0.999 |
Tpau_0003 | ligA | Tpau_0003 | Tpau_2900 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.410 |
Tpau_0003 | polA | Tpau_0003 | Tpau_2445 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.995 |
Tpau_0003 | recA | Tpau_0003 | Tpau_1785 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.854 |
Tpau_0198 | Tpau_0199 | Tpau_0198 | Tpau_0199 | PFAM: peptidase S58 DmpA; KEGG: fal:FRAAL5354 hypothetical protein. | KEGG: rha:RHA1_ro00326 hypothetical protein. | 0.772 |
Tpau_0198 | Tpau_0200 | Tpau_0198 | Tpau_0200 | PFAM: peptidase S58 DmpA; KEGG: fal:FRAAL5354 hypothetical protein. | KEGG: rer:RER_45540 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. | 0.772 |
Tpau_0198 | Tpau_0201 | Tpau_0198 | Tpau_0201 | PFAM: peptidase S58 DmpA; KEGG: fal:FRAAL5354 hypothetical protein. | KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme. | 0.624 |
Tpau_0198 | ku | Tpau_0198 | Tpau_0202 | PFAM: peptidase S58 DmpA; KEGG: fal:FRAAL5354 hypothetical protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.415 |
Tpau_0199 | Tpau_0198 | Tpau_0199 | Tpau_0198 | KEGG: rha:RHA1_ro00326 hypothetical protein. | PFAM: peptidase S58 DmpA; KEGG: fal:FRAAL5354 hypothetical protein. | 0.772 |
Tpau_0199 | Tpau_0200 | Tpau_0199 | Tpau_0200 | KEGG: rha:RHA1_ro00326 hypothetical protein. | KEGG: rer:RER_45540 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. | 0.827 |
Tpau_0199 | Tpau_0201 | Tpau_0199 | Tpau_0201 | KEGG: rha:RHA1_ro00326 hypothetical protein. | KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme. | 0.628 |
Tpau_0199 | ku | Tpau_0199 | Tpau_0202 | KEGG: rha:RHA1_ro00326 hypothetical protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.418 |
Tpau_0200 | Tpau_0198 | Tpau_0200 | Tpau_0198 | KEGG: rer:RER_45540 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. | PFAM: peptidase S58 DmpA; KEGG: fal:FRAAL5354 hypothetical protein. | 0.772 |
Tpau_0200 | Tpau_0199 | Tpau_0200 | Tpau_0199 | KEGG: rer:RER_45540 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. | KEGG: rha:RHA1_ro00326 hypothetical protein. | 0.827 |
Tpau_0200 | Tpau_0201 | Tpau_0200 | Tpau_0201 | KEGG: rer:RER_45540 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. | KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme. | 0.628 |
Tpau_0200 | ku | Tpau_0200 | Tpau_0202 | KEGG: rer:RER_45540 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.418 |
Tpau_0201 | Tpau_0003 | Tpau_0201 | Tpau_0003 | KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.881 |
Tpau_0201 | Tpau_0198 | Tpau_0201 | Tpau_0198 | KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme. | PFAM: peptidase S58 DmpA; KEGG: fal:FRAAL5354 hypothetical protein. | 0.624 |