STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0092PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. (248 aa)    
Predicted Functional Partners:
Coch_0093
Dihydroorotase; KEGG: fps:FP1094 dihydroorotase.
   
   0.841
Coch_0091
PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein.
  
    0.785
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.777
Coch_0389
KEGG: ent:Ent638_2117 hypothetical protein.
     
 0.665
Coch_2146
PFAM: Rhomboid family protein; KEGG: fps:FP1148 rhomboid family protein.
  
   
 0.505
Coch_1969
KEGG: gfo:GFO_0515 hypothetical protein.
  
     0.466
Coch_0151
KEGG: gfo:GFO_2393 hypothetical protein.
  
     0.445
Coch_1932
KEGG: fps:FP1986 hypothetical protein.
 
     0.445
Coch_2092
Protease Do; KEGG: fjo:Fjoh_0019 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.
      
 0.418
lon
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
      
 0.416
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.