STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_0196Hypothetical protein. (239 aa)    
Predicted Functional Partners:
Aaci_0197
SMART: serine/threonine protein kinase; KEGG: scl:sce7114 protein kinase.
 
  
 0.970
Aaci_0195
KEGG: hypothetical protein; TIGRFAM: stage II sporulation protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
 
  
 0.909
Aaci_1018
PFAM: major facilitator superfamily MFS_1; KEGG: pfs:PFLU2767 putative transmembrane transport protein.
  
     0.743
Aaci_1708
Hypothetical protein.
  
     0.731
Aaci_1405
PFAM: flagellar biosynthesis protein FliO; KEGG: aeh:Mlg_0977 flagellar biosynthesis protein, FliO.
 
     0.714
Aaci_1752
PFAM: protein of unknown function DUF95 transmembrane.
  
     0.689
Aaci_1791
TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation AC family protein.
  
     0.686
Aaci_1004
Hypothetical protein.
  
     0.674
Aaci_0452
Hypothetical protein.
  
    0.665
Aaci_1789
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: hypothetical protein LOC100204036.
  
     0.656
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.