STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aaci_1659TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: vco:VC0395_0063 hypothetical protein. (429 aa)    
Predicted Functional Partners:
Aaci_1986
TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD.
 
   
 0.815
Aaci_2778
TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R.
  
   
 0.793
Aaci_1289
PFAM: peptidase U4 sporulation factor SpoIIGA.
  
   
 0.790
Aaci_2750
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: atc:AGR_pAT_567 ribose operon repressor.
  
  
 0.778
Aaci_1789
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: hypothetical protein LOC100204036.
  
    0.777
Aaci_1790
TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD.
  
     0.764
Aaci_1292
TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein.
  
     0.757
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.755
Aaci_1461
PFAM: peptidase S14 ClpP; KEGG: ech:ECH_0401 signal peptide peptidase SppA.
  
     0.749
Aaci_0195
KEGG: hypothetical protein; TIGRFAM: stage II sporulation protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
     0.748
Your Current Organism:
Alicyclobacillus acidocaldarius DSM 446
NCBI taxonomy Id: 521098
Other names: A. acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius ATCC 27009, Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius IFO 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius JCM 5260, Alicyclobacillus acidocaldarius subsp. acidocaldarius NBRC 15652, Alicyclobacillus acidocaldarius subsp. acidocaldarius NCIB 11725, Alicyclobacillus acidocaldarius subsp. acidocaldarius str. DSM 446, Alicyclobacillus acidocaldarius subsp. acidocaldarius strain DSM 446
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