STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1399PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: csc:Csac_0158 ABC-type bacteriocin transporter. (521 aa)    
Predicted Functional Partners:
Athe_0251
KEGG: csc:Csac_0158 ABC-type bacteriocin transporter; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
  
  
 
0.900
Athe_0327
KEGG: csc:Csac_0158 ABC-type bacteriocin transporter; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase.
  
  
 
0.900
Athe_0252
PFAM: secretion protein HlyD family protein; KEGG: cbl:CLK_3683 putative bacteriocin ABC transporter, bacteriocin-binding protein.
 
 
 0.817
Athe_0328
Hypothetical protein; KEGG: cbf:CLI_A0023 putative bacteriocin ABC transporter, bacteriocin-binding protein.
 
 
 0.798
Athe_0894
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fma:FMG_1267 macrolide ABC transporter ATP-binding protein.
  
 
  
0.604
Athe_1578
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: csc:Csac_0655 ABC transporter related.
  
 
  
0.603
Athe_2619
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: csc:Csac_0521 ABC transporter related.
  
 
  
0.575
Athe_1525
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: csc:Csac_2201 ABC transporter related.
  
 
  
0.573
Athe_2618
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: csc:Csac_0522 ABC transporter related.
  
 
  
0.559
Athe_0048
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: csc:Csac_2576 ABC transporter related.
  
 
  
0.556
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.