STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Athe_1925KEGG: csc:Csac_1020 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Athe_1926
PFAM: Radical SAM domain protein; KEGG: csc:Csac_1019 radical SAM domain-containing protein.
 
  
 0.963
Athe_2175
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: csc:Csac_1255 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.545
Athe_0445
PFAM: peptidase M22 glycoprotease; KEGG: csc:Csac_0215 peptidase M22, glycoprotease.
  
    0.488
Athe_1460
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: csc:Csac_2007 single-strand DNA-binding protein.
    
   0.471
Athe_2096
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.471
Athe_2448
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: csc:Csac_1433 single-strand binding protein.
    
   0.471
Athe_1927
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: csc:Csac_1018 beta-galactosidase.
       0.433
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.