STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_2856Neuraminidase (sialidase)-like protein; KEGG: proteophosphoglycan 5. (425 aa)    
Predicted Functional Partners:
Plim_0354
PFAM: sulfatase; KEGG: sus:Acid_2580 sulfatase.
  
 
  0.940
Plim_3913
Sulfatase.
  
 
  0.939
Plim_3447
Glycosyl hydrolase BNR repeat-containing protein.
  
  
 
0.919
Plim_2738
Sulfatase.
 
 
  0.918
Plim_1520
PFAM: sulfatase; KEGG: pat:Patl_0881 sulfatase.
    
  0.902
Plim_1879
PFAM: sulfatase; KEGG: pat:Patl_0881 sulfatase.
 
  
  0.902
Plim_2581
Endonuclease/exonuclease/phosphatase.
 
     0.743
Plim_2416
Hypothetical protein; KEGG: sus:Acid_2651 putative O-antigen related protein.
 
     0.668
Plim_3114
Hypothetical protein; KEGG: bpm:BURPS1710b_A2370 200 kDa antigen p200, putative.
  
     0.641
Plim_2636
Sialate O-acetylesterase.
 
     0.621
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.