STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_1308KEGG: sde:Sde_1937 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Kkor_1307
KEGG: shn:Shewana3_4143 hypothetical protein.
 
    0.933
Kkor_1305
KEGG: ilo:IL1217 plastocyanin domain-containing protein.
 
     0.813
Kkor_1304
TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1218 cation transport ATPase.
     0.749
Kkor_1303
Transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sde:Sde_1934 MerR family transcriptional regulator.
 
     0.725
Kkor_1306
Hypothetical protein; KEGG: ilo:IL1221 nitrogen regulatory protein PII.
       0.702
Kkor_1316
PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: ajs:Ajs_1497 D-xylulose 5-phosphate/D- fructose 6-phosphate phosphoketolase.
 
     0.637
Kkor_1311
Ribose-phosphate pyrophosphokinase; KEGG: lpc:LPC_2256 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.
 
     0.631
Kkor_1294
KEGG: sde:Sde_1944 cytochrome c family protein.
  
     0.617
Kkor_1310
KEGG: ajs:Ajs_1507 thymidine phosphorylase; TIGRFAM: thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like.
 
     0.605
Kkor_1299
PFAM: protein of unknown function DUF411; KEGG: shn:Shewana3_4286 hypothetical protein.
 
     0.584
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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