STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacGKEGG: smu:SMU.1490 6-phospho-beta-galactosidase; TIGRFAM: 6-phospho-beta-galactosidase; PFAM: glycoside hydrolase family 1 (467 aa)    
Predicted Functional Partners:
Lebu_0589
KEGG: spv:SPH_1305 PTS system, lactose-specific IIC component; TIGRFAM: PTS system, lactose-specific IIC subunit; PTS system, lactose/cellobiose family IIB subunit; PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit
 
 
 0.997
Lebu_0588
TIGRFAM: PTS system, lactose-specific IIa component; PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: smu:SMU.1492 PTS system, lactose-specific enzyme IIA EIIA-LAC)
 
 
 0.980
Lebu_0585
KEGG: llc:LACR_D05 galactose-6-phosphate isomerase subunit LacB; TIGRFAM: galactose-6-phosphate isomerase, LacB subunit; sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase
 
 
 0.947
Lebu_0584
KEGG: ser:SERP1795 galactose-6-phosphate isomerase subunit LacA; TIGRFAM: galactose-6-phosphate isomerase, LacA subunit; sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase
 
 
 0.939
Lebu_0587
KEGG: llc:LACR_D03 tagatose 1,6-diphosphate aldolase; TIGRFAM: tagatose 1,6-diphosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase
 
  
 0.735
Lebu_1946
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; sugar- specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; KEGG: emi:Emin_0921 PTS system, glucose-like IIB subunint
  
  
 0.657
Lebu_2238
TIGRFAM: PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: cac:CAC1407 PTS system, beta-glucosides- specific IIABC component
 
  
 0.657
Lebu_0567
TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: smu:SMU.872 putative PTS system, fructose- specific enzyme IIABC component
     
 0.557
Lebu_0586
KEGG: sgo:SGO_1517 tagatose-6-phosphate kinase; TIGRFAM: tagatose-6-phosphate kinase; 1- phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family
 
  
 0.534
Lebu_0591
TIGRFAM: copper transport repressor, CopY/TcrY family; PFAM: Penicillinase repressor; KEGG: lci:LCK_p400008 TcrY
       0.481
Your Current Organism:
Leptotrichia buccalis
NCBI taxonomy Id: 523794
Other names: L. buccalis C-1013-b, Leptotrichia buccalis, Leptotrichia buccalis C-1013-b
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