Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HFX_1825 | glnK1 | HFX_1825 | HFX_0094 | Hypothetical protein. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.650 |
HFX_1825 | glnK2 | HFX_1825 | HFX_0092 | Hypothetical protein. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.650 |
amt1 | amt2 | HFX_0095 | HFX_0093 | Ammonium transporter. | Ammonium transporter. | 0.414 |
amt1 | glnK1 | HFX_0095 | HFX_0094 | Ammonium transporter. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.988 |
amt1 | glnK2 | HFX_0095 | HFX_0092 | Ammonium transporter. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.969 |
amt2 | amt1 | HFX_0093 | HFX_0095 | Ammonium transporter. | Ammonium transporter. | 0.414 |
amt2 | glnK1 | HFX_0093 | HFX_0094 | Ammonium transporter. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.990 |
amt2 | glnK2 | HFX_0093 | HFX_0092 | Ammonium transporter. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.996 |
argB | glnK1 | HFX_0044 | HFX_0094 | Acetylglutamate kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.829 |
argB | glnK2 | HFX_0044 | HFX_0092 | Acetylglutamate kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.829 |
glnA | glnA-2 | HFX_0245 | HFX_1686 | Glutamine synthetase. | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.913 |
glnA | glnA-3 | HFX_0245 | HFX_1688 | Glutamine synthetase. | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.911 |
glnA | glnK2 | HFX_0245 | HFX_0092 | Glutamine synthetase. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.633 |
glnA-2 | glnA | HFX_1686 | HFX_0245 | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | Glutamine synthetase. | 0.913 |
glnA-2 | glnA-3 | HFX_1686 | HFX_1688 | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.936 |
glnA-2 | glnK1 | HFX_1686 | HFX_0094 | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.506 |
glnA-2 | glnK2 | HFX_1686 | HFX_0092 | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.659 |
glnA-3 | glnA | HFX_1688 | HFX_0245 | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | Glutamine synthetase. | 0.911 |
glnA-3 | glnA-2 | HFX_1688 | HFX_1686 | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.936 |
glnA-3 | glnK1 | HFX_1688 | HFX_0094 | Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.506 |
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