Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HFX_1084 | cysD | HFX_1084 | HFX_1085 | Hypothetical protein. | Sulfate adenylyltransferase, small subunit. | 0.661 |
cobA | cysD | HFX_0087 | HFX_1085 | uroporphyrin-III C-methyltransferase. | Sulfate adenylyltransferase, small subunit. | 0.758 |
cobA | cysG | HFX_0087 | HFX_2322 | uroporphyrin-III C-methyltransferase. | Siroheme synthase. | 0.994 |
cobA | nasD | HFX_0087 | HFX_2005 | uroporphyrin-III C-methyltransferase. | Ferredoxin--nitrite reductase; Catalyzes the reduction of nitrite to ammonium in the nitrate assimilation pathway, using ferredoxin as the electron donor. Can use reduced methyl viologen but neither NADPH nor NADH as electron donors. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.912 |
cobA | nirA2 | HFX_0087 | HFX_1918 | uroporphyrin-III C-methyltransferase. | Ferredoxin-nitrite reductase. | 0.912 |
cysD | HFX_1084 | HFX_1085 | HFX_1084 | Sulfate adenylyltransferase, small subunit. | Hypothetical protein. | 0.661 |
cysD | cobA | HFX_1085 | HFX_0087 | Sulfate adenylyltransferase, small subunit. | uroporphyrin-III C-methyltransferase. | 0.758 |
cysD | cysG | HFX_1085 | HFX_2322 | Sulfate adenylyltransferase, small subunit. | Siroheme synthase. | 0.592 |
cysD | cysK1 | HFX_1085 | HFX_1504 | Sulfate adenylyltransferase, small subunit. | Cysteine synthase A. | 0.552 |
cysD | cysT1 | HFX_1085 | HFX_2217 | Sulfate adenylyltransferase, small subunit. | Sulfate transport system permease protein. | 0.768 |
cysD | metC | HFX_1085 | HFX_2761 | Sulfate adenylyltransferase, small subunit. | Cystathionine synthase/lyase (cystathionine gamma-synthase, cystathionine gamma-lyase, cystathionine beta-lyase). | 0.754 |
cysD | metE | HFX_1085 | HFX_2753 | Sulfate adenylyltransferase, small subunit. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group to L-homocysteine resulting in methionine formation. The physiological methyl donor is unknown. | 0.673 |
cysD | metE-2 | HFX_1085 | HFX_2754 | Sulfate adenylyltransferase, small subunit. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase. | 0.673 |
cysD | nasD | HFX_1085 | HFX_2005 | Sulfate adenylyltransferase, small subunit. | Ferredoxin--nitrite reductase; Catalyzes the reduction of nitrite to ammonium in the nitrate assimilation pathway, using ferredoxin as the electron donor. Can use reduced methyl viologen but neither NADPH nor NADH as electron donors. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.743 |
cysD | nirA2 | HFX_1085 | HFX_1918 | Sulfate adenylyltransferase, small subunit. | Ferredoxin-nitrite reductase. | 0.743 |
cysG | cobA | HFX_2322 | HFX_0087 | Siroheme synthase. | uroporphyrin-III C-methyltransferase. | 0.994 |
cysG | cysD | HFX_2322 | HFX_1085 | Siroheme synthase. | Sulfate adenylyltransferase, small subunit. | 0.592 |
cysG | nasD | HFX_2322 | HFX_2005 | Siroheme synthase. | Ferredoxin--nitrite reductase; Catalyzes the reduction of nitrite to ammonium in the nitrate assimilation pathway, using ferredoxin as the electron donor. Can use reduced methyl viologen but neither NADPH nor NADH as electron donors. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.610 |
cysG | nirA2 | HFX_2322 | HFX_1918 | Siroheme synthase. | Ferredoxin-nitrite reductase. | 0.613 |
cysK1 | cysD | HFX_1504 | HFX_1085 | Cysteine synthase A. | Sulfate adenylyltransferase, small subunit. | 0.552 |
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