STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gvpOGas-vesicle operon protein gvpO. (140 aa)    
Predicted Functional Partners:
gvpA
Gas-vesicle operon protein gvpA; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.959
gvpN
Gas-vesicle operon protein gvpN.
 
   
 0.956
gvpF
Gas-vesicle operon protein gvpF; May play a structural or regulatory role in gas vesicle synthesis.
 
   
 0.908
gvpJ
Gas-vesicle operon protein gvpJ; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. This protein could be important for the shape determination of the gas vesicle.
 
   
 0.896
gvpC
Gas-vesicle operon protein gvpC; May confer stability to the gas vesicle membranes. Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
     
 0.894
gvpK
Gas-vesicle operon protein gvpK; May play a structural or regulatory role in gas vesicle synthesis.
 
   
 0.874
gvpL
Gas-vesicle operon protein gvpL; May play a structural or regulatory role in gas vesicle synthesis.
 
   
 0.873
gvpM
Gas-vesicle operon protein gvpM; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. This protein could be important for the shape determination of the gas vesicle.
     
 0.759
gvpI
Gas-vesicle operon protein gvpI; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.750
gvpD
Gas-vesicle operon protein gvpD; May play a role in an energy requiring process such as assembly of gas vesicles in addition to a possible structural or regulatory function.
     
 0.731
Your Current Organism:
Haloferax mediterranei
NCBI taxonomy Id: 523841
Other names: H. mediterranei ATCC 33500, Haloferax mediterranei ATCC 33500, Haloferax mediterranei CGMCC 1.2087, Haloferax mediterranei JCM 8866, Haloferax mediterranei R-4, Haloferax mediterranei str. ATCC 33500, Haloferax mediterranei strain ATCC 33500
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