STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gvpMGas-vesicle operon protein gvpM; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. This protein could be important for the shape determination of the gas vesicle. (86 aa)    
Predicted Functional Partners:
gvpL
Gas-vesicle operon protein gvpL; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.943
gvpF
Gas-vesicle operon protein gvpF; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.941
gvpG
Gas-vesicle operon protein gvpG; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.940
gvpJ
Gas-vesicle operon protein gvpJ; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. This protein could be important for the shape determination of the gas vesicle.
     
 0.937
gvpH
Gas-vesicle operon protein gvpH; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.912
gvpD
Gas-vesicle operon protein gvpD; May play a role in an energy requiring process such as assembly of gas vesicles in addition to a possible structural or regulatory function.
     
 0.905
gvpI
Gas-vesicle operon protein gvpI; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.899
gvpK
Gas-vesicle operon protein gvpK; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.890
gvpE
Gas-vesicle operon protein gvpE; May play a structural or regulatory role in gas vesicle synthesis.
     
 0.849
gvpA
Gas-vesicle operon protein gvpA; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
     
 0.808
Your Current Organism:
Haloferax mediterranei
NCBI taxonomy Id: 523841
Other names: H. mediterranei ATCC 33500, Haloferax mediterranei ATCC 33500, Haloferax mediterranei CGMCC 1.2087, Haloferax mediterranei JCM 8866, Haloferax mediterranei R-4, Haloferax mediterranei str. ATCC 33500, Haloferax mediterranei strain ATCC 33500
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