STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddes_0045KEGG: lip:LI0261 glutamate decarboxylase isozyme; TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; Belongs to the group II decarboxylase family. (468 aa)    
Predicted Functional Partners:
Ddes_0046
PFAM: amino acid permease-associated region; KEGG: lip:LI0262 amino acid transporters.
 
  
 0.950
panC
Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.940
glsA
PFAM: Glutaminase, core; KEGG: ecy:ECSE_0510 putative glutaminase; Belongs to the glutaminase family.
  
 
 0.939
Ddes_1156
Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: ppd:Ppro_2160 ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.
     
 0.936
Ddes_1152
Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: tdn:Suden_1510 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.915
Ddes_1981
PFAM: Aldehyde Dehydrogenase; KEGG: cbe:Cbei_0729 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.912
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.904
Ddes_0218
PFAM: aminotransferase class-III; KEGG: pin:Ping_0051 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.900
Ddes_0976
KEGG: dvl:Dvul_1512 phosphoribosylformylglycinamidine synthase I.
     
  0.900
Ddes_1149
PFAM: glutamine synthetase catalytic region; KEGG: tte:TTE0821 glutamine synthase.
     
  0.900
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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