STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfrFerritin Dps family protein; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. (179 aa)    
Predicted Functional Partners:
Ddes_1255
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dvl:Dvul_1630 anti-sigma-factor antagonist.
  
  
 0.762
rd2
Rubredoxin-type Fe(Cys)4 protein; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
  
  
 0.746
Ddes_1076
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.549
Ddes_0420
PFAM: CI repressor; KEGG: dvl:Dvul_2281 putative phage repressor.
  
     0.535
Ddes_1875
PFAM: Hpt domain protein; KEGG: pmy:Pmen_0835 multi-sensor hybrid histidine kinase.
   
  
 0.517
fur-2
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dvl:Dvul_0284 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.501
Ddes_0191
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_1726 multi-sensor hybrid histidine kinase.
   
  
 0.488
Ddes_1601
KEGG: mgm:Mmc1_2222 PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: GAF domain protein.
   
  
 0.488
Ddes_2176
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: syn:slr2104 two-component hybrid histidine kinase.
   
  
 0.476
Ddes_2061
PFAM: Acyl transferase; KEGG: sco:SCO5892 polyketide synthase.
      
 0.429
Your Current Organism:
Desulfovibrio desulfuricans ATCC 27774
NCBI taxonomy Id: 525146
Other names: D. desulfuricans ATCC 27774, Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
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