Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ddes_1966 | Ddes_1968 | Ddes_1966 | Ddes_1968 | PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.815 |
| Ddes_1966 | rnpA | Ddes_1966 | Ddes_1969 | PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.885 |
| Ddes_1966 | rpmH | Ddes_1966 | Ddes_1970 | PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein. | PFAM: ribosomal protein L34; KEGG: hha:Hhal_1228 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.665 |
| Ddes_1966 | yidC | Ddes_1966 | Ddes_1967 | PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein. | YidC translocase/secretase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.924 |
| Ddes_1968 | Ddes_1966 | Ddes_1968 | Ddes_1966 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein. | 0.815 |
| Ddes_1968 | rnpA | Ddes_1968 | Ddes_1969 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.941 |
| Ddes_1968 | rplD | Ddes_1968 | Ddes_0661 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.426 |
| Ddes_1968 | rpmH | Ddes_1968 | Ddes_1970 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | PFAM: ribosomal protein L34; KEGG: hha:Hhal_1228 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.764 |
| Ddes_1968 | yidC | Ddes_1968 | Ddes_1967 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | YidC translocase/secretase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.903 |
| rex | rnpA | Ddes_2257 | Ddes_1969 | CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.784 |
| rnpA | Ddes_1966 | Ddes_1969 | Ddes_1966 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein. | 0.885 |
| rnpA | Ddes_1968 | Ddes_1969 | Ddes_1968 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.941 |
| rnpA | rex | Ddes_1969 | Ddes_2257 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. | 0.784 |
| rnpA | rplD | Ddes_1969 | Ddes_0661 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.818 |
| rnpA | rplU | Ddes_1969 | Ddes_2250 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.779 |
| rnpA | rpmH | Ddes_1969 | Ddes_1970 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | PFAM: ribosomal protein L34; KEGG: hha:Hhal_1228 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.977 |
| rnpA | rpsJ | Ddes_1969 | Ddes_0659 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.792 |
| rnpA | rpsL | Ddes_1969 | Ddes_2071 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.791 |
| rnpA | rpsT | Ddes_1969 | Ddes_0917 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.792 |
| rnpA | yidC | Ddes_1969 | Ddes_1967 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | YidC translocase/secretase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.971 |
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