STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEW53153.1Bile acid transporter; COG: COG0385; Pfam: PF01758; InterPro: IPR002657. (331 aa)    
Predicted Functional Partners:
ilvD
Dihydroxy-acid dehydratase; COG: COG0129; Pfam: PF00920; InterPro: IPR000581; Belongs to the IlvD/Edd family.
  
    0.743
EEW53154.1
Hypothetical protein; COG: COG2151; Pfam: PF01883; InterPro: IPR002744.
       0.723
EEW54554.1
ABC transporter, ATP-binding protein; COG: COG1119; Pfam: PF00005; InterPro: IPR003439.
 
    0.483
Your Current Organism:
Lactobacillus antri
NCBI taxonomy Id: 525309
Other names: L. antri DSM 16041, Lactobacillus antri DSM 16041, Lactobacillus antri str. DSM 16041, Lactobacillus antri strain DSM 16041
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.