STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEJ72676.1Cupin domain protein; COG: COG1917. (167 aa)    
Predicted Functional Partners:
EEJ72654.1
Carboxymuconolactone decarboxylase family protein.
  
 0.977
EEJ71978.1
Hypothetical protein; COG: COG1073.
    0.757
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
  0.681
EEJ72233.1
Transcriptional regulator, AraC family.
  
 0.619
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.543
purB
Adenylosuccinate lyase; COG: COG0015; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.509
EEJ71984.1
Hypothetical protein; COG: COG1073.
    0.479
EEJ72009.1
Amidohydrolase family protein; COG: COG2159.
    
  0.459
lysR1
Transcriptional regulator, LysR family; COG: COG0583; Belongs to the LysR transcriptional regulatory family.
 
  
 0.453
EEJ71976.1
Transcriptional regulator, LysR family; COG: COG0583; Belongs to the LysR transcriptional regulatory family.
 
  
 0.423
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.