STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppBABC transporter, permease protein; COG: COG0601. (308 aa)    
Predicted Functional Partners:
EEJ72326.1
ABC transporter, permease protein; COG: COG1173.
 
 0.997
oppD
ABC transporter, ATP-binding protein; COG: COG0444; Belongs to the ABC transporter superfamily.
 0.996
oppF
ABC transporter, ATP-binding protein; COG: COG4608; Belongs to the ABC transporter superfamily.
 
 0.995
EEJ71180.1
ABC transporter, permease protein; COG: COG1173.
 
 0.987
EEJ71181.1
ABC transporter, ATP-binding protein; COG: COG0444; Belongs to the ABC transporter superfamily.
 0.984
EEJ71182.1
ABC transporter, ATP-binding protein; COG: COG4608; Belongs to the ABC transporter superfamily.
 
 0.973
oppA2
ABC transporter, substrate-binding protein, family 5; COG: COG0747.
 
 0.971
oppA3
ABC transporter, substrate-binding protein, family 5.
 
 0.964
EEJ72914.1
ABC transporter, substrate-binding protein, family 5; COG: COG0747.
 
 0.953
EEJ72026.1
ABC transporter, substrate-binding protein, family 5.
 
 0.953
Your Current Organism:
Lactobacillus ultunensis
NCBI taxonomy Id: 525365
Other names: L. ultunensis DSM 16047, Lactobacillus ultunensis DSM 16047, Lactobacillus ultunensis str. DSM 16047, Lactobacillus ultunensis strain DSM 16047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.