STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_0804PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_3339 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Dbac_0805
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_0186 extracellular solute-binding protein.
       0.488
Dbac_3216
PFAM: nucleoside recognition domain protein; KEGG: sfu:Sfum_3415 nucleoside recognition domain protein.
  
     0.431
Dbac_0806
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0185 amino acid ABC transporter permease.
  
    0.407
Dbac_0808
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0183 amino acid ABC transporter permease.
  
    0.407
Dbac_0803
PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: dde:Dde_0793 RNA-binding region RNP-1.
       0.401
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.