STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_1908PFAM: Thioredoxin domain; KEGG: sfu:Sfum_3604 thioredoxin domain. (128 aa)    
Predicted Functional Partners:
Dbac_1909
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_2782 hypothetical protein.
 
 
 0.979
Dbac_1538
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.864
Dbac_1730
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like.
  
 
 0.844
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
 
 0.839
Dbac_1542
KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC.
  
 
 0.822
Dbac_0306
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mfa:Mfla_1161 thioredoxin.
 
  
 0.653
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
  0.637
Dbac_1910
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dsy:DSY4672 hypothetical protein.
     
 0.567
Dbac_1907
TIGRFAM: redox-active disulfide protein 2; KEGG: dde:Dde_2778 redox-active disulfide protein 2.
       0.560
Dbac_2508
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF.
  
  
 0.531
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.