STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dbac_2216TIGRFAM: FemAB-related protein, PEP-CTERM system- associated; PFAM: protein of unknown function DUF482; KEGG: ppd:Ppro_2469 hypothetical protein. (342 aa)    
Predicted Functional Partners:
Dbac_2217
TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: gbm:Gbem_1774 polysaccharide deactylase family protein, PEP-Cterm locus subfamily.
 
     0.952
Dbac_2221
TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: gsu:GSU1984 polysaccharide chain length determinant protein, putative.
 
     0.837
Dbac_2214
PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_3063 glycosyl transferase family protein.
 
     0.828
Dbac_2212
PFAM: O-antigen polymerase; KEGG: dvu:DVUA0048 exopolysaccharide production protein, putative.
 
     0.824
Dbac_2199
TIGRFAM: eight transmembrane protein EpsH; KEGG: ppd:Ppro_2443 eight transmembrane protein EpsH.
 
     0.808
Dbac_2219
TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; KEGG: dde:Dde_0833 ATPase.
 
     0.790
Dbac_2223
TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: gme:Gmet_2031 sugar transferase.
 
     0.790
Dbac_2213
KEGG: dvu:DVUA0061 hypothetical protein.
       0.773
Dbac_2215
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvu:DVUA0045 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.773
Dbac_2196
Histidine kinase; KEGG: gur:Gura_2325 integral membrane sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
     0.766
Your Current Organism:
Desulfomicrobium baculatum
NCBI taxonomy Id: 525897
Other names: D. baculatum DSM 4028, Desulfomicrobium baculatum DSM 4028, Desulfomicrobium baculatum str. DSM 4028, Desulfomicrobium baculatum strain DSM 4028
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