STRINGSTRING
Sdel_0018 protein (Sulfurospirillum deleyianum) - STRING interaction network
"Sdel_0018" - YidE/YbjL protein in Sulfurospirillum deleyianum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0018YidE/YbjL protein (529 aa)    
Predicted Functional Partners:
Sdel_0017
Hypothetical protein (158 aa)
              0.859
Sdel_0019
Outer membrane porin (402 aa)
              0.583
Sdel_0016
Chemotaxis sensory transducer (357 aa)
              0.487
Sdel_1637
Hypothetical protein (197 aa)
   
          0.443
Sdel_0020
Nickel ABC transporter periplasmic protein (539 aa)
              0.413
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: Dehalospirillum, Dehalospirillum Scholz-Muramatsu et al. 2002, Geospirillum, S. deleyianum, S. deleyianum DSM 6946, Sulfurospirillum, Sulfurospirillum deleyianum, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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