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Sdel_0025 protein (Sulfurospirillum deleyianum) - STRING interaction network
"Sdel_0025" - MATE efflux family protein in Sulfurospirillum deleyianum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0025MATE efflux family protein (433 aa)    
Predicted Functional Partners:
Sdel_0021
Nickel ABC transporter permease (311 aa)
         
  0.850
Sdel_0022
Nickel ABC transporter permease subunit NikC (273 aa)
              0.848
Sdel_0023
ABC transporter (272 aa)
              0.847
Sdel_0024
ABC transporter (254 aa)
              0.846
Sdel_0020
Nickel ABC transporter periplasmic protein (539 aa)
 
          0.731
Sdel_0019
Outer membrane porin (402 aa)
 
          0.577
Sdel_0028
Class V aminotransferase (380 aa)
   
        0.523
Sdel_0029
Hypothetical protein (72 aa)
              0.519
Sdel_0027
SirA family protein (70 aa)
              0.519
Sdel_0026
Hypothetical protein (354 aa)
              0.519
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: Dehalospirillum, Dehalospirillum Scholz-Muramatsu et al. 2002, Geospirillum, S. deleyianum, S. deleyianum DSM 6946, Sulfurospirillum, Sulfurospirillum deleyianum, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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