STRINGSTRING
Sdel_0036 protein (Sulfurospirillum deleyianum) - STRING interaction network
"Sdel_0036" - Hypothetical protein in Sulfurospirillum deleyianum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0036Hypothetical protein (298 aa)    
Predicted Functional Partners:
Sdel_0035
Hypothetical protein (132 aa)
              0.859
Sdel_1879
Hypothetical protein (180 aa)
   
        0.698
Sdel_1573
ABC transporter (590 aa)
   
      0.665
Sdel_0034
AMMECR1 domain-containing protein (180 aa)
   
        0.649
Sdel_1572
ABC transporter (591 aa)
     
      0.620
Sdel_1055
ABC transporter (571 aa)
     
      0.620
Sdel_0885
ABC transporter (590 aa)
     
      0.620
Sdel_2250
Phosphatidate cytidylyltransferase (254 aa)
     
      0.619
Sdel_0033
Hypothetical protein (263 aa)
   
        0.579
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (420 aa)
     
      0.563
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: Dehalospirillum, Dehalospirillum Scholz-Muramatsu et al. 2002, Geospirillum, S. deleyianum, S. deleyianum DSM 6946, Sulfurospirillum, Sulfurospirillum deleyianum, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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