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rpsU protein (Sulfurospirillum deleyianum) - STRING interaction network
"rpsU" - 30S ribosomal protein S21 in Sulfurospirillum deleyianum
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Experiments
Databases
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[Homology]
Score
rpsU30S ribosomal protein S21 (70 aa)    
Predicted Functional Partners:
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (160 aa)
     
 
  0.938
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (91 aa)
   
 
  0.937
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (90 aa)
     
 
  0.924
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (130 aa)
   
 
  0.915
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA (132 aa)
   
 
  0.913
rpsP
30S ribosomal protein S16 (76 aa)
   
 
  0.912
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (88 aa)
     
 
  0.912
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit (125 aa)
     
 
  0.887
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (131 aa)
     
 
  0.881
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (103 aa)
     
 
  0.870
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: Dehalospirillum, Dehalospirillum Scholz-Muramatsu et al. 2002, Geospirillum, S. deleyianum, S. deleyianum DSM 6946, Sulfurospirillum, Sulfurospirillum deleyianum, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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