STRINGSTRING
Sdel_0125 protein (Sulfurospirillum deleyianum) - STRING interaction network
"Sdel_0125" - ABC transporter in Sulfurospirillum deleyianum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0125ABC transporter (246 aa)    
Predicted Functional Partners:
Sdel_0123
Polar amino acid ABC transporter permease (321 aa)
      0.979
Sdel_0124
Family 3 extracellular solute-binding protein (266 aa)
 
          0.960
Sdel_1063
Diguanylate cyclase (458 aa)
   
 
  0.719
Sdel_1845
Extracellular solute-binding protein (262 aa)
   
 
  0.712
Sdel_1844
Extracellular solute-binding protein (260 aa)
   
 
  0.712
Sdel_0529
Glutamate synthase (ferredoxin) (1474 aa)
         
  0.631
Sdel_0128
Hypothetical protein (301 aa)
   
        0.556
Sdel_0126
Hypothetical protein (106 aa)
              0.520
Sdel_1724
Hypothetical protein (406 aa)
 
     
    0.517
Sdel_0023
ABC transporter (272 aa)
 
   
 
0.509
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: Dehalospirillum, Dehalospirillum Scholz-Muramatsu et al. 2002, Geospirillum, S. deleyianum, S. deleyianum DSM 6946, Sulfurospirillum, Sulfurospirillum deleyianum, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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