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Sdel_0136 protein (Sulfurospirillum deleyianum) - STRING interaction network
"Sdel_0136" - AMP-dependent synthetase and ligase in Sulfurospirillum deleyianum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sdel_0136AMP-dependent synthetase and ligase (520 aa)    
Predicted Functional Partners:
Sdel_0135
Aromatic hydrocarbon degradation membrane protein (405 aa)
 
   
  0.910
Sdel_1457
AMP-dependent synthetase and ligase (629 aa)
 
 
0.900
nfo
Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5’-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin (280 aa)
              0.815
Sdel_0133
Hypothetical protein (161 aa)
              0.789
Sdel_0132
Ferric-uptake regulator (123 aa)
              0.783
Sdel_0137
ATPase AAA (577 aa)
   
      0.649
Sdel_1346
Thioesterase superfamily protein (180 aa)
     
      0.618
Sdel_0216
Chorismate mutase (355 aa)
     
   
  0.578
Sdel_0131
Periplasmic solute binding protein (285 aa)
              0.576
Sdel_1898
Pyruvate ferredoxin/flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1187 aa)
         
  0.560
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: Dehalospirillum, Dehalospirillum Scholz-Muramatsu et al. 2002, Geospirillum, S. deleyianum, S. deleyianum DSM 6946, Sulfurospirillum, Sulfurospirillum deleyianum, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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