Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sdel_0405 | Sdel_0469 | Sdel_0405 | Sdel_0469 | PFAM: VacJ family lipoprotein; KEGG: abu:Abu_1443 VacJ-like lipoprotein. | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | 0.509 |
Sdel_0469 | Sdel_0405 | Sdel_0469 | Sdel_0405 | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | PFAM: VacJ family lipoprotein; KEGG: abu:Abu_1443 VacJ-like lipoprotein. | 0.509 |
Sdel_0469 | Sdel_0470 | Sdel_0469 | Sdel_0470 | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | PFAM: CopG domain protein DNA-binding domain protein; KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein. | 0.457 |
Sdel_0469 | Sdel_0471 | Sdel_0469 | Sdel_0471 | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: tdn:Suden_0387 hypothetical protein. | 0.457 |
Sdel_0469 | hcp | Sdel_0469 | Sdel_0468 | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.403 |
Sdel_0470 | Sdel_0469 | Sdel_0470 | Sdel_0469 | PFAM: CopG domain protein DNA-binding domain protein; KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein. | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | 0.457 |
Sdel_0470 | Sdel_0471 | Sdel_0470 | Sdel_0471 | PFAM: CopG domain protein DNA-binding domain protein; KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein. | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: tdn:Suden_0387 hypothetical protein. | 0.826 |
Sdel_0471 | Sdel_0469 | Sdel_0471 | Sdel_0469 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: tdn:Suden_0387 hypothetical protein. | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | 0.457 |
Sdel_0471 | Sdel_0470 | Sdel_0471 | Sdel_0470 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: tdn:Suden_0387 hypothetical protein. | PFAM: CopG domain protein DNA-binding domain protein; KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein. | 0.826 |
hcp | Sdel_0469 | Sdel_0468 | Sdel_0469 | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. | 0.403 |