STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (88 aa)    
Predicted Functional Partners:
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.997
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
 
 0.992
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.990
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: cff:CFF8240_1324 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.989
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 
 0.989
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: ccv:CCV52592_1262 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
 
 0.989
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: ccv:CCV52592_0722 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.989
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.989
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.989
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: cff:CFF8240_0114 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.988
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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