STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0599PFAM: Proline dehydrogenase; KEGG: sus:Acid_2007 L-proline dehydrogenase. (306 aa)    
Predicted Functional Partners:
Tter_0870
PFAM: Aldehyde Dehydrogenase; KEGG: sfu:Sfum_2203 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 0.993
Tter_0560
PFAM: Aldehyde Dehydrogenase; KEGG: aba:Acid345_1459 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
 0.941
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.941
Tter_0212
PFAM: Aldehyde Dehydrogenase; KEGG: bsu:BSU02470 hypothetical protein.
 
 
 0.931
Tter_1239
PFAM: Aldehyde Dehydrogenase; acyl-CoA reductase; KEGG: aba:Acid345_1531 aldehyde dehydrogenase.
 
 
 0.925
Tter_2662
KEGG: ret:RHE_PB00090 proline iminopeptidase protein; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.
     
  0.900
Tter_0600
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.682
Tter_0601
PFAM: dienelactone hydrolase; alpha/beta hydrolase fold; peptidase S15; KEGG: mlo:mlr6657 hypothetical protein.
       0.565
Tter_1189
PFAM: Citrate synthase; KEGG: bsu:BSU29140 methylcitrate synthase; Belongs to the citrate synthase family.
   
  
 0.565
Tter_1110
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: acp:A2cp1_0997 cytochrome bd ubiquinol oxidase subunit I.
   
 
 0.559
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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