STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ90944.1General secretion pathway protein L. (349 aa)    
Predicted Functional Partners:
SIQ91023.1
General secretion pathway protein D.
 
  
 0.904
SIQ91052.1
Type II secretion system protein K (GspK).
 
     0.891
SIQ90863.1
Type II secretion system protein H (GspH).
 
   
 0.880
SIQ90883.1
General secretion pathway protein I.
 
   
 0.875
SIQ90810.1
Type II secretion system protein E (GspE).
 
 
 
 0.872
SIQ90837.1
Type II secretion system protein F (GspF).
 
 
 
 0.866
SIQ10603.1
General secretion pathway protein D.
 
  
 0.809
SIQ90975.1
Type II secretion system (T2SS), protein M subtype b.
       0.790
SIQ10447.1
General secretion pathway protein H.
 
   
 0.787
SIQ10627.1
General secretion pathway protein K.
 
     0.782
Your Current Organism:
Acidiphilium rubrum
NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.