STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_00035Calcium-binding mitochondrial carrier protein Aralar1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (690 aa)    
Predicted Functional Partners:
TRM5
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
 
      0.520
VDBG_00251
Mitochondrial import inner membrane translocase subunit tim-22.
     
 0.513
VDBG_02147
NADH-ubiquinone oxidoreductase B18 subunit family protein.
      
 0.483
VDBG_01575
Cytochrome c oxidase assembly protein COX11.
      
 0.481
VDBG_07759
AT hook motif family protein.
      
 0.481
VDBG_08814
Mitochondrial import inner membrane translocase subunit TIM13; Belongs to the small Tim family.
     
 0.442
VDBG_02324
Uncharacterized protein.
      
 0.434
VDBG_09810
NADH:ubiquinone oxidoreductase 14kD subunit.
      
 0.430
VDBG_02877
MCU domain-containing protein.
      
 0.424
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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