STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_07509Cysteine sulfinic acid decarboxylase. (182 aa)    
Predicted Functional Partners:
VDBG_08304
Transport Sec1b; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.632
VDBG_02181
Synaptobrevin.
    
 0.580
VDBG_00920
Cysteine dioxygenase.
     
 0.560
VDBG_06219
Pheromone-regulated membrane protein.
   
 
 0.536
VDBG_00664
SSOI.
     
 0.523
VDBG_07345
SSO2.
     
 0.523
VDBG_08737
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.510
VDBG_09333
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.510
VDBG_00867
Pyridoxamine 5'-phosphate oxidase.
     
 0.509
VDBG_04787
Predicted protein.
   
 0.492
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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