STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_01731Glutamate decarboxylase; Belongs to the group II decarboxylase family. (491 aa)    
Predicted Functional Partners:
VDBG_08737
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.965
VDBG_09333
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.965
VDBG_06650
NAD-specific glutamate dehydrogenase.
   
 
 0.964
VDBG_08373
Pantothenate synthetase.
  
 
 0.933
VDBG_01542
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.927
VDBG_02594
Aldehyde dehydrogenase.
   
 0.927
VDBG_03953
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.927
VDBG_05141
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.927
VDBG_08711
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.927
VDBG_09176
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.927
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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