STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0078PFAM: type IV pilus assembly PilZ; KEGG: ace:Acel_0863 type IV pilus assembly PilZ. (211 aa)    
Predicted Functional Partners:
Gobs_0983
TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: ace:Acel_0836 flagellar protein FliS.
  
  
 0.705
Gobs_0079
KEGG: mkm:Mkms_1572 putative ABC transporter.
       0.684
Gobs_0080
KEGG: bcv:Bcav_2640 GTP-binding protein HSR1- related protein.
       0.681
Gobs_0984
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
    0.681
Gobs_0967
PFAM: OmpA/MotB domain protein; KEGG: ace:Acel_0852 OmpA/MotB domain-containing protein.
  
 
 0.610
Gobs_0989
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ace:Acel_0832 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.
  
  
 0.595
Gobs_5006
PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: nca:Noca_3603 CheW protein.
  
  
 0.571
Gobs_0968
PFAM: MotA/TolQ/ExbB proton channel; KEGG: nca:Noca_0749 MotA/TolQ/ExbB proton channel.
  
   0.564
Gobs_5002
MCP methyltransferase, CheR-type; KEGG: kra:Krad_0322 protein-glutamate O- methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type.
  
  
 0.543
Gobs_0965
PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: ace:Acel_0854 flagellar motor switch protein FliM.
  
 
 0.525
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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