STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1723TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: nca:Noca_3205 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)    
Predicted Functional Partners:
Gobs_1731
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rop:ROP_33240 putative hydrolase.
 
 
 0.960
Gobs_1939
PFAM: Aldehyde Dehydrogenase; KEGG: mkm:Mkms_1287 delta-1-piperideine-6- carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.931
Gobs_2216
PFAM: Aldehyde Dehydrogenase; KEGG: mav:MAV_4936 succinic semialdehyde dehydrogenase.
 
 0.931
Gobs_2749
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: rop:ROP_05260 methylmalonate-semialdehyde dehydrogenase.
  
 0.931
Gobs_2828
PFAM: Aldehyde Dehydrogenase; KEGG: cag:Cagg_2534 succinic semialdehyde dehydrogenase.
 
 0.931
Gobs_3617
PFAM: Aldehyde Dehydrogenase; KEGG: rha:RHA1_ro00658 succinate-semialdehyde dehydrogenase (NAD(P)+).
 
 0.931
Gobs_4194
PFAM: Aldehyde Dehydrogenase; KEGG: dra:DR_A0343 succinic-semialdehyde dehydrogenase, putative.
 
 0.931
Gobs_4391
PFAM: Aldehyde Dehydrogenase; KEGG: stp:Strop_0827 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.931
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.917
panC
Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.906
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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