node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gobs_0002 | Gobs_2120 | Gobs_0002 | Gobs_2120 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | 0.940 |
Gobs_0002 | Gobs_2694 | Gobs_0002 | Gobs_2694 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: kra:Krad_1887 5'-3' exonuclease. | 0.970 |
Gobs_0002 | Gobs_4360 | Gobs_0002 | Gobs_4360 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: sen:SACE_0953 putative ATP-dependent dsDNA exonuclease. | 0.565 |
Gobs_0002 | polA | Gobs_0002 | Gobs_3201 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.995 |
Gobs_0002 | sbcD | Gobs_0002 | Gobs_4361 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.600 |
Gobs_1360 | Gobs_2115 | Gobs_1360 | Gobs_2115 | PFAM: DNA primase small subunit; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | DNA topoisomerase; KEGG: stp:Strop_1767 hypothetical protein. | 0.426 |
Gobs_1360 | Gobs_2120 | Gobs_1360 | Gobs_2120 | PFAM: DNA primase small subunit; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | 0.997 |
Gobs_1360 | Gobs_2121 | Gobs_1360 | Gobs_2121 | PFAM: DNA primase small subunit; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | 0.925 |
Gobs_1360 | ku | Gobs_1360 | Gobs_2119 | PFAM: DNA primase small subunit; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.877 |
Gobs_1945 | Gobs_2120 | Gobs_1945 | Gobs_2120 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: sma:SAV_1696 hypothetical protein. | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | 0.978 |
Gobs_1945 | ku | Gobs_1945 | Gobs_2119 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: sma:SAV_1696 hypothetical protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.907 |
Gobs_2115 | Gobs_1360 | Gobs_2115 | Gobs_1360 | DNA topoisomerase; KEGG: stp:Strop_1767 hypothetical protein. | PFAM: DNA primase small subunit; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | 0.426 |
Gobs_2115 | Gobs_2120 | Gobs_2115 | Gobs_2120 | DNA topoisomerase; KEGG: stp:Strop_1767 hypothetical protein. | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | 0.580 |
Gobs_2115 | Gobs_2121 | Gobs_2115 | Gobs_2121 | DNA topoisomerase; KEGG: stp:Strop_1767 hypothetical protein. | TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | 0.468 |
Gobs_2115 | ku | Gobs_2115 | Gobs_2119 | DNA topoisomerase; KEGG: stp:Strop_1767 hypothetical protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.519 |
Gobs_2115 | polA | Gobs_2115 | Gobs_3201 | DNA topoisomerase; KEGG: stp:Strop_1767 hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.431 |
Gobs_2120 | Gobs_0002 | Gobs_2120 | Gobs_0002 | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.940 |
Gobs_2120 | Gobs_1360 | Gobs_2120 | Gobs_1360 | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | PFAM: DNA primase small subunit; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | 0.997 |
Gobs_2120 | Gobs_1945 | Gobs_2120 | Gobs_1945 | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: sma:SAV_1696 hypothetical protein. | 0.978 |
Gobs_2120 | Gobs_2115 | Gobs_2120 | Gobs_2115 | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein. | DNA topoisomerase; KEGG: stp:Strop_1767 hypothetical protein. | 0.580 |